TF_ChIP-seq_ENCSR222MYK
TF_ChIP-seq ENCSR222MYK [biosample_summary="Homo sapiens K562" and target="SRSF7"]
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| Id: | TF_ChIP-seq/ENCSR222MYK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR222MYK [biosamplesummary="Homo sapiens K562" and target="SRSF7"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: conservative IDR thresholded peaks audit_internal_action: Released analysis {ENCAN403QBM|/analyses/ENCAN403QBM/} has in progress subobject document {d3495187-ada2-47ae-959b-f9f62ee786f3|/documents/d3495187-ada2-47ae-959b-f9f62ee786f3/} audit_internal_action: Released analysis {ENCAN403QBM|/analyses/ENCAN403QBM/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF708FFD|/files/ENCFF708FFD/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 14380031 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting SRSF7-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF218FHN|/files/ENCFF218FHN/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 10729873 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting SRSF7-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF708FFD|/files/ENCFF708FFD/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF708FFD|/files/ENCFF708FFD/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.68. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF218FHN|/files/ENCFF218FHN/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF218FHN|/files/ENCFF218FHN/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.45. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR222MYK | float |
TF_ChIP-seq_ENCSR222MYK |
TF_ChIP-seq ENCSR222MYK [biosample_summary="Homo sapiens K562" and target="SRSF7"]
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[3.73, 54.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF217MBF.bed.gz | 4.57 KB | 97229f7e96f735dd10e3596af43e2063 |
| ENCFF217MBF.bed.gz.dvc | 98.0 B | e80c97d32cc93168c97e30253f56b82d |
| ENCFF217MBF.tabix.bed.gz | 3.51 KB | 6de8d717fde7d0dc234f4b6ab0819f23 |
| ENCFF217MBF.tabix.bed.gz.dvc | 104.0 B | 3d36e3acf0346e0b34f8a8180cd88a71 |
| ENCFF217MBF.tabix.bed.gz.tbi | 5.92 KB | 0897c0540fcc380c468c7a716e2d6a4c |
| ENCFF217MBF.tabix.bed.gz.tbi.dvc | 108.0 B | c198654b484d20603518df4274608ca8 |
| genomic_resource.yaml | 5.2 KB | 2f69d8a38373891bd3b995d712bf3bba |
| genomic_resource_original.yaml | 5.11 KB | 82420930c5b47b25a28b2cb349f0ee09 |
| statistics/ |