TF_ChIP-seq_ENCSR221GAN
TF_ChIP-seq ENCSR221GAN [biosample_summary="Homo sapiens K562" and target="MBD2"]
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| Id: | TF_ChIP-seq/ENCSR221GAN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR221GAN [biosamplesummary="Homo sapiens K562" and target="MBD2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 3 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN454YVM|/analyses/ENCAN454YVM/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF963TCB|/files/ENCFF963TCB/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 19563088 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting MBD2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF788YHU|/files/ENCFF788YHU/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.26 and a self consistency ratio of 2.17. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR221GAN | float |
TF_ChIP-seq_ENCSR221GAN |
TF_ChIP-seq ENCSR221GAN [biosample_summary="Homo sapiens K562" and target="MBD2"]
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[5.28, 547] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF788YHU.bed.gz | 252.73 KB | 60954158ff8dcb5401ecd481b956543f |
| ENCFF788YHU.bed.gz.dvc | 100.0 B | cd2238d3bef943248ee8ae38bdf3a6b2 |
| ENCFF788YHU.tabix.bed.gz | 200.59 KB | 1e33f8f1302ad51d1f7671c338f57490 |
| ENCFF788YHU.tabix.bed.gz.dvc | 106.0 B | 16ecc065ae9c1d1e78d8c4897fda704d |
| ENCFF788YHU.tabix.bed.gz.tbi | 101.46 KB | 2447f4a0abd5f6cca8046eaab6ac8d4f |
| ENCFF788YHU.tabix.bed.gz.tbi.dvc | 110.0 B | d1b190ff9213e2e9171dcde4bd1a7b49 |
| genomic_resource.yaml | 2.38 KB | 61f2286da040d41661d69ae104233b98 |
| genomic_resource_original.yaml | 2.28 KB | ddd81a120977eb8060b43936a2484e19 |
| statistics/ |