TF_ChIP-seq_ENCSR220AQM
TF_ChIP-seq ENCSR220AQM [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GTF3A" and target="GTF3A"]
×
| Id: | TF_ChIP-seq/ENCSR220AQM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR220AQM [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GTF3A" and target="GTF3A"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens GTF3A output_type: conservative IDR thresholded peaks audit_internal_action: Released analysis {ENCAN106VMO|/analyses/ENCAN106VMO/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN106VMO|/analyses/ENCAN106VMO/} has in progress subobject document {cb8993fc-52f9-4008-82e2-77fdb8966686|/documents/cb8993fc-52f9-4008-82e2-77fdb8966686/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF143SDH|/files/ENCFF143SDH/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF143SDH|/files/ENCFF143SDH/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.10. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF914ERD|/files/ENCFF914ERD/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF914ERD|/files/ENCFF914ERD/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.69. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR220AQM | float |
TF_ChIP-seq_ENCSR220AQM |
TF_ChIP-seq ENCSR220AQM [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GTF3A" and target="GTF3A"]
|
|
[12, 433] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF413CKX.bed.gz | 129.24 KB | befd5a6cf0d662c54e7ddf46d9caf907 |
| ENCFF413CKX.bed.gz.dvc | 100.0 B | 43335f97c6b4d56df2a781195bae4393 |
| ENCFF413CKX.tabix.bed.gz | 98.7 KB | baaa7eee98cd923478b2b328ebb679dd |
| ENCFF413CKX.tabix.bed.gz.dvc | 106.0 B | f48a3eeb098ecdbeabe28d413337e951 |
| ENCFF413CKX.tabix.bed.gz.tbi | 48.16 KB | 5d7ac5a301f96e1b76f510306d1f29b2 |
| ENCFF413CKX.tabix.bed.gz.tbi.dvc | 109.0 B | 3167a76bab756f71aa0907ecf1761275 |
| genomic_resource.yaml | 4.46 KB | 997cbe711ae453afbbbfa3d812acf10f |
| genomic_resource_original.yaml | 4.29 KB | c30decf5eb783dcff9947604b3eac76a |
| statistics/ |