TF_ChIP-seq_ENCSR218QFN
TF_ChIP-seq ENCSR218QFN [biosample_summary="Homo sapiens PC-3" and target="EZH2"]
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| Id: | TF_ChIP-seq/ENCSR218QFN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR218QFN [biosamplesummary="Homo sapiens PC-3" and target="EZH2"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN976PYJ|/analyses/ENCAN976PYJ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN976PYJ|/analyses/ENCAN976PYJ/} has in progress subobject document {75d65ddf-765f-47f8-8778-a42e9ef742a5|/documents/75d65ddf-765f-47f8-8778-a42e9ef742a5/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF542EBX|/files/ENCFF542EBX/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF542EBX|/files/ENCFF542EBX/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.86. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR218QFN | float |
TF_ChIP-seq_ENCSR218QFN |
TF_ChIP-seq ENCSR218QFN [biosample_summary="Homo sapiens PC-3" and target="EZH2"]
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[11.7, 187] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF080GLG.bed.gz | 60.34 KB | 83304f78a58c9c465a964ae2a6f491ff |
| ENCFF080GLG.bed.gz.dvc | 99.0 B | e5a2255abe15faa46cd30fa3b414c3be |
| ENCFF080GLG.tabix.bed.gz | 44.66 KB | b93f8f53847e04e47dbb2b51bb88f3aa |
| ENCFF080GLG.tabix.bed.gz.dvc | 105.0 B | 5a0711c54ae4932f679d40052958ada4 |
| ENCFF080GLG.tabix.bed.gz.tbi | 23.16 KB | 6218a81fb9c62453df3217a546d29b3b |
| ENCFF080GLG.tabix.bed.gz.tbi.dvc | 109.0 B | d7ea42150070d6ab7c07164bb962d358 |
| genomic_resource.yaml | 2.87 KB | db11a2ce411bf51b869929e74d47af96 |
| genomic_resource_original.yaml | 2.77 KB | d680aca081d7e0b9d3c5e35a5cc25539 |
| statistics/ |