TF_ChIP-seq_ENCSR218MVT
TF_ChIP-seq ENCSR218MVT [biosample_summary="Homo sapiens neural crest cell" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR218MVT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR218MVT [biosamplesummary="Homo sapiens neural crest cell" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female embryo (5 days) output_type: conservative IDR thresholded peaks audit_internal_action: Released analysis {ENCAN245BBN|/analyses/ENCAN245BBN/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF583OOM|/files/ENCFF583OOM/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF583OOM|/files/ENCFF583OOM/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.65. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR218MVT | float |
TF_ChIP-seq_ENCSR218MVT |
TF_ChIP-seq ENCSR218MVT [biosample_summary="Homo sapiens neural crest cell" and target="CTCF"]
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[8.26, 784] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF113SCL.bed.gz | 1.06 MB | 163c1a9590443eb5e6785ec5a5e4bc6a |
| ENCFF113SCL.bed.gz.dvc | 101.0 B | a80a8f43502edc55189eaf40b37f049d |
| ENCFF113SCL.tabix.bed.gz | 769.88 KB | 135a4bdcce5eee88ca23aca359800ccb |
| ENCFF113SCL.tabix.bed.gz.dvc | 106.0 B | 04378fc19fc1331423ed8f5e220f1ad0 |
| ENCFF113SCL.tabix.bed.gz.tbi | 310.59 KB | d5b6f30e30e35896cf2027a490122e07 |
| ENCFF113SCL.tabix.bed.gz.tbi.dvc | 110.0 B | b4b105268412a6d6cf814664503ce258 |
| genomic_resource.yaml | 2.7 KB | a9f299c70657eabb0f334215d00644ad |
| genomic_resource_original.yaml | 2.6 KB | 9ab8f18151e12a93edbb603bb3dd506c |
| statistics/ |