| Id: | TF_ChIP-seq/ENCSR216GKQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR216GKQ [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN5A" and target="ZSCAN5A"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN5A output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN132EDH|/analyses/ENCAN132EDH/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF944JDD|/files/ENCFF944JDD/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF944JDD|/files/ENCFF944JDD/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.20. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF236RSN|/files/ENCFF236RSN/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF236RSN|/files/ENCFF236RSN/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.97. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF154DSR|/files/ENCFF154DSR/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline have a rescue ratio of 1.86 and a self consistency ratio of 5.65. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR216GKQ | float |
TF_ChIP-seq_ENCSR216GKQ |
TF_ChIP-seq ENCSR216GKQ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN5A" and target="ZSCAN5A"]
|
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[11.1, 398] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF154DSR.bed.gz | 238.75 KB | 859156034eb3cf00cbab716fed01112b |
| ENCFF154DSR.bed.gz.dvc | 100.0 B | 044df90f72c5d70afa5666b68e5f2b8b |
| ENCFF154DSR.tabix.bed.gz | 175.9 KB | b594b1f165a657d53c869ce912a1c0f2 |
| ENCFF154DSR.tabix.bed.gz.dvc | 106.0 B | c0538891b9dd8c8bfe00332859121b47 |
| ENCFF154DSR.tabix.bed.gz.tbi | 84.91 KB | 3e3898f0298f88c3bd4a3099b2f1a7a3 |
| ENCFF154DSR.tabix.bed.gz.tbi.dvc | 109.0 B | d711ff031e36dc01d3611e03108bc54f |
| genomic_resource.yaml | 4.77 KB | eaf271057dd4697ffb48a3149a4bcd35 |
| genomic_resource_original.yaml | 4.6 KB | 86cf6c2aa96fe2da1eb32397a6e99fc9 |
| statistics/ |