TF_ChIP-seq_ENCSR214RUE
TF_ChIP-seq ENCSR214RUE [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF219" and target="ZNF219"]
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| Id: | TF_ChIP-seq/ENCSR214RUE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR214RUE [biosamplesummary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF219" and target="ZNF219"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF219 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN275NDD|/analyses/ENCAN275NDD/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF896EEE|/files/ENCFF896EEE/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 10.00. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF660FXN|/files/ENCFF660FXN/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline have a rescue ratio of 1.48 and a self consistency ratio of 4.36. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR214RUE | float |
TF_ChIP-seq_ENCSR214RUE |
TF_ChIP-seq ENCSR214RUE [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF219" and target="ZNF219"]
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[8.69, 458] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF660FXN.bed.gz | 71.68 KB | e9a27d9230f69304aa662b3b41842d9e |
| ENCFF660FXN.bed.gz.dvc | 99.0 B | 98d7168d374f11145a105e2841048860 |
| ENCFF660FXN.tabix.bed.gz | 50.13 KB | 5650294bade9288ffbc308ed862d7ed6 |
| ENCFF660FXN.tabix.bed.gz.dvc | 105.0 B | c744e8ae6d1cf9d5df972b0c3dcd77c5 |
| ENCFF660FXN.tabix.bed.gz.tbi | 36.86 KB | 6bf97fad92d44348a59dc8023b1692d5 |
| ENCFF660FXN.tabix.bed.gz.tbi.dvc | 109.0 B | b95915f86b64bcd22c5266c532d97e77 |
| genomic_resource.yaml | 2.85 KB | 685e36a6589a1f1f6dac903fc199812b |
| genomic_resource_original.yaml | 2.68 KB | f71fe96f4350205717675e3c82d54fd8 |
| statistics/ |