| Id: | TF_ChIP-seq/ENCSR214PDW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR214PDW [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF780A" and target="ZNF780A"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF780A output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN359KDT|/analyses/ENCAN359KDT/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF526FLC|/files/ENCFF526FLC/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF526FLC|/files/ENCFF526FLC/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.25. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF980USI|/files/ENCFF980USI/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF980USI|/files/ENCFF980USI/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.01. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR214PDW | float |
TF_ChIP-seq_ENCSR214PDW |
TF_ChIP-seq ENCSR214PDW [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF780A" and target="ZNF780A"]
|
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[15.8, 549] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF794OSY.bed.gz | 18.97 KB | ba744f45d4b84f1186b06e6e66c50140 |
| ENCFF794OSY.bed.gz.dvc | 99.0 B | da303be0f64db2f51e16f7c43969a7f7 |
| ENCFF794OSY.tabix.bed.gz | 12.26 KB | 82a02e9fb7234c2eca1873eec7815d0a |
| ENCFF794OSY.tabix.bed.gz.dvc | 105.0 B | 04ac52cd2190c17875c8284a6234d815 |
| ENCFF794OSY.tabix.bed.gz.tbi | 13.01 KB | 9e5a117f59a17fda1b9f81c97ed67663 |
| ENCFF794OSY.tabix.bed.gz.tbi.dvc | 109.0 B | 04ad18283afd7e20efad11832a0e7f3e |
| genomic_resource.yaml | 4.24 KB | 9052019b33bfa1005cff53b090130a08 |
| genomic_resource_original.yaml | 4.08 KB | c01861455fc73de6dcf7eb6a9496ba05 |
| statistics/ |