TF_ChIP-seq_ENCSR210HBN
TF_ChIP-seq ENCSR210HBN [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens IKZF5" and target="IKZF5"]
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| Id: | TF_ChIP-seq/ENCSR210HBN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR210HBN [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens IKZF5" and target="IKZF5"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens IKZF5 output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN135SNV|/analyses/ENCAN135SNV/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF140YFE|/files/ENCFF140YFE/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF140YFE|/files/ENCFF140YFE/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 7.52. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR210HBN | float |
TF_ChIP-seq_ENCSR210HBN |
TF_ChIP-seq ENCSR210HBN [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens IKZF5" and target="IKZF5"]
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[9.03, 514] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF716MKU.bed.gz | 517.68 KB | e8448b8cc9fdc022242ae89016faa9ac |
| ENCFF716MKU.bed.gz.dvc | 100.0 B | 007368cb3c0ec150af9bda139611fc62 |
| ENCFF716MKU.tabix.bed.gz | 421.54 KB | 1a29d1cb26b8017b180caaca2a9c3c65 |
| ENCFF716MKU.tabix.bed.gz.dvc | 106.0 B | 6cfcffa0148903da3aafe8d7440793b9 |
| ENCFF716MKU.tabix.bed.gz.tbi | 153.59 KB | e4b89d5b5ad4a799f11c26423d28e091 |
| ENCFF716MKU.tabix.bed.gz.tbi.dvc | 110.0 B | 038a8efd7a39cdf56477b5819f7e7365 |
| genomic_resource.yaml | 2.95 KB | 4d75e73e6fc874ab2e393c4403ff6ac6 |
| genomic_resource_original.yaml | 2.79 KB | 6f801c430e4a3322526f144e12a24b65 |
| statistics/ |