TF_ChIP-seq_ENCSR208VNN
TF_ChIP-seq ENCSR208VNN [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens IFI16" and target="IFI16"]
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| Id: | TF_ChIP-seq/ENCSR208VNN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR208VNN [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens IFI16" and target="IFI16"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens IFI16 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN203BMX|/analyses/ENCAN203BMX/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF748UJX|/files/ENCFF748UJX/} processed by ChIP-seq ENCODE4 v2.1.2 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF748UJX|/files/ENCFF748UJX/} processed by ChIP-seq ENCODE4 v2.1.2 GRCh38 pipeline was generated from a library with PBC2 value of 4.90. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF655CJO|/files/ENCFF655CJO/} processed by ChIP-seq ENCODE4 v2.1.2 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF655CJO|/files/ENCFF655CJO/} processed by ChIP-seq ENCODE4 v2.1.2 GRCh38 pipeline was generated from a library with PBC2 value of 4.72. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR208VNN | float |
TF_ChIP-seq_ENCSR208VNN |
TF_ChIP-seq ENCSR208VNN [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens IFI16" and target="IFI16"]
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[14.5, 1.23e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF518SJY.bed.gz | 30.27 KB | cfe00bdd14523d07a5b232e1e333cff6 |
| ENCFF518SJY.bed.gz.dvc | 99.0 B | 96f4526f48df3051338c872f3426d191 |
| ENCFF518SJY.tabix.bed.gz | 19.04 KB | 5b941779be1daf145888d6d2c4cca3ff |
| ENCFF518SJY.tabix.bed.gz.dvc | 105.0 B | a3f0fb9ee0ecb24c55197ad8b343aaf7 |
| ENCFF518SJY.tabix.bed.gz.tbi | 18.28 KB | ff52900e984029f38537badb6c2d3505 |
| ENCFF518SJY.tabix.bed.gz.tbi.dvc | 109.0 B | 560d49a526566aaeac9395961d59c76a |
| genomic_resource.yaml | 4.23 KB | ff94e9c8bd0479a4f66508ed24596abd |
| genomic_resource_original.yaml | 4.07 KB | 225af09043c5c78a6fdd16da786a6aa8 |
| statistics/ |