TF_ChIP-seq_ENCSR206BVQ
TF_ChIP-seq ENCSR206BVQ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF786" and target="ZNF786"]
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| Id: | TF_ChIP-seq/ENCSR206BVQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR206BVQ [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF786" and target="ZNF786"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF786 output_type: conservative IDR thresholded peaks audit_internal_action: Released analysis {ENCAN938NIC|/analyses/ENCAN938NIC/} has in progress subobject document {92dab324-7a5d-44e0-a31e-2de0b3ded84d|/documents/92dab324-7a5d-44e0-a31e-2de0b3ded84d/} audit_internal_action: Released analysis {ENCAN938NIC|/analyses/ENCAN938NIC/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF653CQB|/files/ENCFF653CQB/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF653CQB|/files/ENCFF653CQB/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.18. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF584TEZ|/files/ENCFF584TEZ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF584TEZ|/files/ENCFF584TEZ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.88. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR206BVQ | float |
TF_ChIP-seq_ENCSR206BVQ |
TF_ChIP-seq ENCSR206BVQ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF786" and target="ZNF786"]
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[12.2, 476] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF458FBS.bed.gz | 191.57 KB | 661a1d7a1932af6d60b2a324b8f8e835 |
| ENCFF458FBS.bed.gz.dvc | 100.0 B | 0a683ff3ee6e3ffe0f80a2c3c476d645 |
| ENCFF458FBS.tabix.bed.gz | 142.82 KB | 9e69c3e62555eb967a52780a4c9fb95e |
| ENCFF458FBS.tabix.bed.gz.dvc | 106.0 B | ea40373877d7b81ece6bb69cd8874110 |
| ENCFF458FBS.tabix.bed.gz.tbi | 68.48 KB | a1bf7cea05e584105bba20fc04a9a90b |
| ENCFF458FBS.tabix.bed.gz.tbi.dvc | 109.0 B | c5a1c6c6b0fd4d37c2b20e1f383df7cb |
| genomic_resource.yaml | 4.46 KB | da4e7fa4b31bf6c2f3242bb6db5dae16 |
| genomic_resource_original.yaml | 4.3 KB | da04def2ca91a4f347d4c4412e71d8be |
| statistics/ |