type: position_score
table:
  filename: ENCFF500RBO.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR205SKQ
  column_index: 3
  type: float
  desc: 'TF_ChIP-seq ENCSR205SKQ [biosample_summary="Homo sapiens GM12878" and target="YBX1"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'TF_ChIP-seq ENCSR205SKQ [biosample_summary="Homo sapiens GM12878" and target="YBX1"]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1, Rep 2\n\
    \n**summary**: \n\n**output\\_type**: optimal IDR thresholded peaks\n\n**audit\\\
    _internal\\_action**: Archived analysis {ENCAN907ITH|/analyses/ENCAN907ITH/} has\
    \ in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/}\n\
    \n**audit\\_internal\\_action**: File {ENCFF500RBO|/files/ENCFF500RBO/} with status\
    \ 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status\
    \ 'archived'.\n\n**audit\\_internal\\_action**: Released file {ENCFF500RBO|/files/ENCFF500RBO/}\
    \ has replaced subobject file {e85dd2a7-a764-4120-b41f-aec03a6234d7|/files/e85dd2a7-a764-4120-b41f-aec03a6234d7/}\n\
    \n**audit\\_warning**: Replicate concordance in ChIP-seq experiments is measured\
    \ by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed\
    \ IDR thresholded peaks files {ENCFF699GCM|/files/ENCFF699GCM/}, {ENCFF500RBO|/files/ENCFF500RBO/}\
    \ processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 2.47 and\
    \ a self consistency ratio of 1.04. According to ENCODE standards, having both\
    \ rescue ratio and self consistency ratio values < 2 is recommended, but having\
    \ only one of the ratio values < 2 is acceptable.\n\n**audit\\_warning**: Replicate\
    \ concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible\
    \ Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF821YKR|/files/ENCFF821YKR/},\
    \ {ENCFF551ECC|/files/ENCFF551ECC/} processed by ChIP-seq ENCODE3 GRCh38 pipeline\
    \ have a rescue ratio of 2.47 and a self consistency ratio of 1.04. According\
    \ to ENCODE standards, having both rescue ratio and self consistency ratio values\
    \ < 2 is recommended, but having only one of the ratio values < 2 is acceptable."
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR205SKQ
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens GM12878
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0002784/
    perturbed: false
    doi: 10.17989/ENCSR205SKQ
    date_created: '2016-05-13T19:37:32.128518+00:00'
    date_released: '2016-08-24'
    submitter_comment: ''
    target: YBX1
