TF_ChIP-seq_ENCSR204ZIN
TF_ChIP-seq ENCSR204ZIN [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TOPORS" and target="TOPORS"]
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| Id: | TF_ChIP-seq/ENCSR204ZIN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR204ZIN [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TOPORS" and target="TOPORS"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens TOPORS output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN538SAB|/analyses/ENCAN538SAB/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF417JZO|/files/ENCFF417JZO/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF417JZO|/files/ENCFF417JZO/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.05. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF015FNV|/files/ENCFF015FNV/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF015FNV|/files/ENCFF015FNV/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.02. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR204ZIN | float |
TF_ChIP-seq_ENCSR204ZIN |
TF_ChIP-seq ENCSR204ZIN [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens TOPORS" and target="TOPORS"]
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[10.4, 439] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF114SGL.bed.gz | 244.58 KB | f60f119512390b3ccc9c1699e710a1a9 |
| ENCFF114SGL.bed.gz.dvc | 100.0 B | 8108573e22e0c6b9692abee99bac7cd0 |
| ENCFF114SGL.tabix.bed.gz | 193.5 KB | c8e9bfdd541c600af4e38adf8eb76006 |
| ENCFF114SGL.tabix.bed.gz.dvc | 106.0 B | 0e2c12191df33b3eeba37a1ad8ee5a8d |
| ENCFF114SGL.tabix.bed.gz.tbi | 81.97 KB | b310f869ad75187ffe3d084434b0cb59 |
| ENCFF114SGL.tabix.bed.gz.tbi.dvc | 109.0 B | 60e613868b04fb0d2f503a2c2845a64e |
| genomic_resource.yaml | 4.24 KB | a3edbf12940ff5ecd063761c9901c22f |
| genomic_resource_original.yaml | 4.07 KB | aaac4618b61ed866148992040e2fc688 |
| statistics/ |