TF_ChIP-seq_ENCSR203QEB
TF_ChIP-seq ENCSR203QEB [biosample_summary="Homo sapiens Panc1" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR203QEB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR203QEB [biosamplesummary="Homo sapiens Panc1" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN582LII|/analyses/ENCAN582LII/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF753HNR|/files/ENCFF753HNR/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF683TLX|/files/ENCFF683TLX/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF683TLX|/files/ENCFF683TLX/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 6.84. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR203QEB | float |
TF_ChIP-seq_ENCSR203QEB |
TF_ChIP-seq ENCSR203QEB [biosample_summary="Homo sapiens Panc1" and target="CTCF"]
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[19.8, 7.01e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF753HNR.bed.gz | 1.38 MB | 99609b7546ae0958672dd056439bb13a |
| ENCFF753HNR.bed.gz.dvc | 101.0 B | 12b19be6f1e3214d9ab888425b121d47 |
| ENCFF753HNR.tabix.bed.gz | 710.8 KB | 199bada96cefa3ecc1c8f1f05cef584a |
| ENCFF753HNR.tabix.bed.gz.dvc | 106.0 B | bf2b90269d79d11c13cc778c534fdc01 |
| ENCFF753HNR.tabix.bed.gz.tbi | 299.79 KB | b4736f65e023e3470b6ca062612bea78 |
| ENCFF753HNR.tabix.bed.gz.tbi.dvc | 110.0 B | 4aa8502ecf3c9b7c034aae3f878404aa |
| genomic_resource.yaml | 2.83 KB | 8d7a6831adb5dea9e9189f5179ddee96 |
| genomic_resource_original.yaml | 2.73 KB | 873775be80b3642b22603603905c3cef |
| statistics/ |