TF_ChIP-seq_ENCSR202OLE
TF_ChIP-seq ENCSR202OLE [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZMYM4" and target="ZMYM4"]
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| Id: | TF_ChIP-seq/ENCSR202OLE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR202OLE [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZMYM4" and target="ZMYM4"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZMYM4 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN995FZG|/analyses/ENCAN995FZG/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF465SVA|/files/ENCFF465SVA/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF465SVA|/files/ENCFF465SVA/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.06. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR202OLE | float |
TF_ChIP-seq_ENCSR202OLE |
TF_ChIP-seq ENCSR202OLE [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZMYM4" and target="ZMYM4"]
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[11.4, 531] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF229WDE.bed.gz | 737.2 KB | c1af553518b5c421e390be1eda9ebbe8 |
| ENCFF229WDE.bed.gz.dvc | 100.0 B | 6725f3ef4381b0f47253c7e7284f570e |
| ENCFF229WDE.tabix.bed.gz | 598.99 KB | 41b844e851d45942e47540efad9746b5 |
| ENCFF229WDE.tabix.bed.gz.dvc | 106.0 B | 2b623e2fb4094da2535e9e4f5a2102a6 |
| ENCFF229WDE.tabix.bed.gz.tbi | 207.56 KB | fdc5689a8bed277a574f800ab7361dd5 |
| ENCFF229WDE.tabix.bed.gz.tbi.dvc | 110.0 B | 2b042516b9a76f00af08729a154917c9 |
| genomic_resource.yaml | 2.96 KB | 4b5c5802a30cd848857f0b4455b9cd1f |
| genomic_resource_original.yaml | 2.8 KB | 3f2a9451223c866867df3a1b27bd0c36 |
| statistics/ |