TF_ChIP-seq_ENCSR201DCF
TF_ChIP-seq ENCSR201DCF [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP91" and target="ZFP91"]
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| Id: | TF_ChIP-seq/ENCSR201DCF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR201DCF [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP91" and target="ZFP91"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZFP91 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN435WSF|/analyses/ENCAN435WSF/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF248YYY|/files/ENCFF248YYY/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF248YYY|/files/ENCFF248YYY/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.33. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF382POI|/files/ENCFF382POI/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF382POI|/files/ENCFF382POI/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.20. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR201DCF | float |
TF_ChIP-seq_ENCSR201DCF |
TF_ChIP-seq ENCSR201DCF [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP91" and target="ZFP91"]
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[8.59, 693] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF718IGO.bed.gz | 92.87 KB | 49f3f82c32ae50e935dd3b01e66231e0 |
| ENCFF718IGO.bed.gz.dvc | 99.0 B | 382256cec12d889fd26d9bb3f790589a |
| ENCFF718IGO.tabix.bed.gz | 64.86 KB | 3662b446e66c49ab339f343bca7dc171 |
| ENCFF718IGO.tabix.bed.gz.dvc | 105.0 B | bca3b4e370a8069460fb05a92848ded7 |
| ENCFF718IGO.tabix.bed.gz.tbi | 43.35 KB | a24979343efb9d7ab94ea18bd3cab3ae |
| ENCFF718IGO.tabix.bed.gz.tbi.dvc | 109.0 B | 8d22d4b1ad1bc51d9eb290bc960c744b |
| genomic_resource.yaml | 4.23 KB | cb4598c172d20efef56aa50043a161c9 |
| genomic_resource_original.yaml | 4.07 KB | 7c72566214492db461a2fd09b0845a13 |
| statistics/ |