TF_ChIP-seq_ENCSR200AWS
TF_ChIP-seq ENCSR200AWS [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB40" and target="ZBTB40"]
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| Id: | TF_ChIP-seq/ENCSR200AWS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR200AWS [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB40" and target="ZBTB40"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB40 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN248ZIB|/analyses/ENCAN248ZIB/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF071QYT|/files/ENCFF071QYT/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF071QYT|/files/ENCFF071QYT/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.78. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF517BCL|/files/ENCFF517BCL/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF517BCL|/files/ENCFF517BCL/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.93. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR200AWS | float |
TF_ChIP-seq_ENCSR200AWS |
TF_ChIP-seq ENCSR200AWS [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB40" and target="ZBTB40"]
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[15.2, 1.08e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF927LFN.bed.gz | 361.32 KB | 4ccc2d3c1000df2df34a5adaf405bc36 |
| ENCFF927LFN.bed.gz.dvc | 100.0 B | 18d6182ef31e4c1cb4b5916aabeac643 |
| ENCFF927LFN.tabix.bed.gz | 276.72 KB | d2b4c38c2bdf35573bdb54b6dd858da5 |
| ENCFF927LFN.tabix.bed.gz.dvc | 106.0 B | 2ae35b3cb4fbd9ca2ea5001bb75a5a7e |
| ENCFF927LFN.tabix.bed.gz.tbi | 116.4 KB | c302e75cc3a8e8b0ab8482a6b4df0abc |
| ENCFF927LFN.tabix.bed.gz.tbi.dvc | 110.0 B | ae48c97e94f99d12757992556e668d34 |
| genomic_resource.yaml | 4.24 KB | 716ae869678a948935e892f9c36e4111 |
| genomic_resource_original.yaml | 4.07 KB | d0ac7cf0d6909fdd7dfec104b4260180 |
| statistics/ |