TF_ChIP-seq_ENCSR199PXS
TF_ChIP-seq ENCSR199PXS [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB43" and target="ZBTB43"]
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| Id: | TF_ChIP-seq/ENCSR199PXS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR199PXS [biosamplesummary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB43" and target="ZBTB43"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB43 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN665MDT|/analyses/ENCAN665MDT/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF112BRS|/files/ENCFF112BRS/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF112BRS|/files/ENCFF112BRS/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.59. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF768LAO|/files/ENCFF768LAO/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF768LAO|/files/ENCFF768LAO/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.80. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR199PXS | float |
TF_ChIP-seq_ENCSR199PXS |
TF_ChIP-seq ENCSR199PXS [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB43" and target="ZBTB43"]
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[9.37, 545] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF058ZDU.bed.gz | 186.05 KB | 72e625d8fe939047509c001c6ee188ef |
| ENCFF058ZDU.bed.gz.dvc | 100.0 B | 53d8af7b6c57a87987061720304d9fbc |
| ENCFF058ZDU.tabix.bed.gz | 140.19 KB | cbb175b236ad97aad9f11503010f962d |
| ENCFF058ZDU.tabix.bed.gz.dvc | 106.0 B | c6759ae2ce2d14d4d3d1674ce1c11edc |
| ENCFF058ZDU.tabix.bed.gz.tbi | 74.1 KB | 6fc5ce2b1326f3ee6f9c9be6386efb09 |
| ENCFF058ZDU.tabix.bed.gz.tbi.dvc | 109.0 B | 6faf1ef2b850cfe1232388a87c28d44f |
| genomic_resource.yaml | 4.24 KB | 236d155c133c08d7487fa3abf33be3a4 |
| genomic_resource_original.yaml | 4.07 KB | 3766a3e7f1115e503849b9c87d01d8df |
| statistics/ |