TF_ChIP-seq_ENCSR199MFT
TF_ChIP-seq ENCSR199MFT [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXQ1" and target="FOXQ1"]
×
| Id: | TF_ChIP-seq/ENCSR199MFT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR199MFT [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXQ1" and target="FOXQ1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens FOXQ1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN293RVA|/analyses/ENCAN293RVA/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF746SKK|/files/ENCFF746SKK/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF746SKK|/files/ENCFF746SKK/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.78. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF711QPO|/files/ENCFF711QPO/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF711QPO|/files/ENCFF711QPO/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.95. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF811LFF|/files/ENCFF811LFF/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline have a rescue ratio of 1.25 and a self consistency ratio of 2.72. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR199MFT | float |
TF_ChIP-seq_ENCSR199MFT |
TF_ChIP-seq ENCSR199MFT [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXQ1" and target="FOXQ1"]
|
|
[9.21, 424] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF811LFF.bed.gz | 191.37 KB | 99bb5c1e168499508f2da72aa65ff9b9 |
| ENCFF811LFF.bed.gz.dvc | 100.0 B | 07ab212cc1ef8f84de027987c89d539b |
| ENCFF811LFF.tabix.bed.gz | 144.92 KB | 0806a2912c2e3c84d52c343fc56b03ae |
| ENCFF811LFF.tabix.bed.gz.dvc | 106.0 B | 68b58c7d1cfb0c82e5891dcb51f8f8d6 |
| ENCFF811LFF.tabix.bed.gz.tbi | 71.89 KB | 9b098f9c7beed302e6cbcc306ef4184c |
| ENCFF811LFF.tabix.bed.gz.tbi.dvc | 109.0 B | 885781ec63886c89d2fea6fe5b42ab95 |
| genomic_resource.yaml | 4.75 KB | 685227af9ddb4e183e550e100ccc14ec |
| genomic_resource_original.yaml | 4.59 KB | d745577dc6802bc12c0d49091903daa3 |
| statistics/ |