TF_ChIP-seq_ENCSR198RHC
TF_ChIP-seq ENCSR198RHC [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF782" and target="ZNF782"]
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| Id: | TF_ChIP-seq/ENCSR198RHC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR198RHC [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF782" and target="ZNF782"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF782 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN749ZTY|/analyses/ENCAN749ZTY/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN749ZTY|/analyses/ENCAN749ZTY/} has in progress subobject document {be23fd06-3b87-4abb-8a27-80b40ee9a793|/documents/be23fd06-3b87-4abb-8a27-80b40ee9a793/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF894PFK|/files/ENCFF894PFK/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF894PFK|/files/ENCFF894PFK/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.41. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF274LOV|/files/ENCFF274LOV/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF274LOV|/files/ENCFF274LOV/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.55. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF462RVE|/files/ENCFF462RVE/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.74 and a self consistency ratio of 3.45. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF449SAF|/files/ENCFF449SAF/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.74 and a self consistency ratio of 3.45. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR198RHC | float |
TF_ChIP-seq_ENCSR198RHC |
TF_ChIP-seq ENCSR198RHC [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF782" and target="ZNF782"]
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[11, 492] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF462RVE.bed.gz | 208.74 KB | 2de52842dbb7d06135752a729b02d71b |
| ENCFF462RVE.bed.gz.dvc | 100.0 B | 5f7f512f507291cec76888495f3e0979 |
| ENCFF462RVE.tabix.bed.gz | 161.47 KB | 3727587288dc32908b4868f316b35789 |
| ENCFF462RVE.tabix.bed.gz.dvc | 106.0 B | 93df7bf39bdbf48d9498bc229b4ccc1d |
| ENCFF462RVE.tabix.bed.gz.tbi | 76.33 KB | 479a1e89960422a1357289982e432ea3 |
| ENCFF462RVE.tabix.bed.gz.tbi.dvc | 109.0 B | 4f54321b3b4e9554efcb26a18c656ed4 |
| genomic_resource.yaml | 5.49 KB | e748ed547901fc4cd525931b3907d058 |
| genomic_resource_original.yaml | 5.33 KB | b822882d47fe8e805eda0fc33cd3af8b |
| statistics/ |