TF_ChIP-seq_ENCSR198BHH
TF_ChIP-seq ENCSR198BHH [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF550" and target="ZNF550"]
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| Id: | TF_ChIP-seq/ENCSR198BHH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR198BHH [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF550" and target="ZNF550"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF550 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN264KEM|/analyses/ENCAN264KEM/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN264KEM|/analyses/ENCAN264KEM/} has replaced subobject file {c4fee4c7-f934-4376-8bce-8c186f30f925|/files/c4fee4c7-f934-4376-8bce-8c186f30f925/} audit_internal_action: Released analysis {ENCAN264KEM|/analyses/ENCAN264KEM/} has replaced subobject file {c62a67db-1adf-4361-ad27-15e6ad242957|/files/c62a67db-1adf-4361-ad27-15e6ad242957/} audit_internal_action: Released analysis {ENCAN264KEM|/analyses/ENCAN264KEM/} has in progress subobject document {fd6e7463-f1dc-4d8a-9495-8eebe377cd2c|/documents/fd6e7463-f1dc-4d8a-9495-8eebe377cd2c/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF475JJP|/files/ENCFF475JJP/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF475JJP|/files/ENCFF475JJP/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.24. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF968SJO|/files/ENCFF968SJO/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF968SJO|/files/ENCFF968SJO/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.07. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF414GKA|/files/ENCFF414GKA/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.16 and a self consistency ratio of 2.03. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF175OGG|/files/ENCFF175OGG/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.16 and a self consistency ratio of 2.03. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR198BHH | float |
TF_ChIP-seq_ENCSR198BHH |
TF_ChIP-seq ENCSR198BHH [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF550" and target="ZNF550"]
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[10.6, 193] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF414GKA.bed.gz | 92.69 KB | 19bcca110513f8d82bd8596e3c5d13c3 |
| ENCFF414GKA.bed.gz.dvc | 99.0 B | d96a1f4583b6565f87148a5dccd1fa65 |
| ENCFF414GKA.tabix.bed.gz | 68.8 KB | d1b9187cbdf85938e9a7218e7c011812 |
| ENCFF414GKA.tabix.bed.gz.dvc | 105.0 B | f485f98a67d0c8f5307174a1a46d542a |
| ENCFF414GKA.tabix.bed.gz.tbi | 40.59 KB | 6e0bf2111e92828172eee197d4540218 |
| ENCFF414GKA.tabix.bed.gz.tbi.dvc | 109.0 B | df6e6acff80cede3e62c78c6919cfcc1 |
| genomic_resource.yaml | 5.9 KB | 4280f7b12fc270c02b315d06cf1f6932 |
| genomic_resource_original.yaml | 5.73 KB | b083feb13c8c131348b27573b5ed5f3b |
| statistics/ |