TF_ChIP-seq_ENCSR197WGI
TF_ChIP-seq ENCSR197WGI [biosample_summary="Homo sapiens IMR-90" and target="NFE2L2"]
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| Id: | TF_ChIP-seq/ENCSR197WGI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR197WGI [biosamplesummary="Homo sapiens IMR-90" and target="NFE2L2"] |
| Description: |
status: released biological_replicates: Rep 2, Rep 3 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN971GAU|/analyses/ENCAN971GAU/} has in progress subobject document {1f0c0f65-a8a9-4a1f-b4ab-11183bcde26e|/documents/1f0c0f65-a8a9-4a1f-b4ab-11183bcde26e/} audit_internal_action: Released analysis {ENCAN971GAU|/analyses/ENCAN971GAU/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF702KJV|/files/ENCFF702KJV/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 13586492 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting NFE2L2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF702KJV|/files/ENCFF702KJV/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF702KJV|/files/ENCFF702KJV/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 4.78. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR197WGI | float |
TF_ChIP-seq_ENCSR197WGI |
TF_ChIP-seq ENCSR197WGI [biosample_summary="Homo sapiens IMR-90" and target="NFE2L2"]
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[4.41, 555] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF585XWV.bed.gz | 265.57 KB | 12dd635037db757981ecf769ea1bb1ac |
| ENCFF585XWV.bed.gz.dvc | 100.0 B | b0687f47253c8f3f699111cbbec7a8ab |
| ENCFF585XWV.tabix.bed.gz | 201.87 KB | b83a43e19b4cd98c77c5f9f967b3aa69 |
| ENCFF585XWV.tabix.bed.gz.dvc | 106.0 B | c11f499eb400e5b000c7b7d8c82f681c |
| ENCFF585XWV.tabix.bed.gz.tbi | 134.61 KB | 9dc94388721a1b16a611971343405727 |
| ENCFF585XWV.tabix.bed.gz.tbi.dvc | 110.0 B | 081c170986df21c30a8614258d59635d |
| genomic_resource.yaml | 3.38 KB | 43e652db37f4074571dcef178eb19f3a |
| genomic_resource_original.yaml | 3.29 KB | 3be70eb2413a02c17c65c4ebd497e644 |
| statistics/ |