TF_ChIP-seq_ENCSR197DJH
TF_ChIP-seq ENCSR197DJH [biosample_summary="Homo sapiens MCF-7" and target="SREBF1"]
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| Id: | TF_ChIP-seq/ENCSR197DJH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR197DJH [biosamplesummary="Homo sapiens MCF-7" and target="SREBF1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF275WAD|/files/ENCFF275WAD/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN829GIV|/analyses/ENCAN829GIV/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF774XPS|/files/ENCFF774XPS/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF774XPS|/files/ENCFF774XPS/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.46. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR197DJH | float |
TF_ChIP-seq_ENCSR197DJH |
TF_ChIP-seq ENCSR197DJH [biosample_summary="Homo sapiens MCF-7" and target="SREBF1"]
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[15.5, 1.92e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF275WAD.bed.gz | 191.54 KB | c897ce99251b23e1908a5e8b8568b525 |
| ENCFF275WAD.bed.gz.dvc | 100.0 B | 3118868c2bdb4611d2065ca023363bc1 |
| ENCFF275WAD.tabix.bed.gz | 131.8 KB | 19fd0916246f1c061016d33ddb70646e |
| ENCFF275WAD.tabix.bed.gz.dvc | 106.0 B | 5670df036cd042712b029474dd65007a |
| ENCFF275WAD.tabix.bed.gz.tbi | 83.3 KB | 7872f1ce1566044eb66a78ed019eee5d |
| ENCFF275WAD.tabix.bed.gz.tbi.dvc | 109.0 B | b1e0fdd7becde58c22449fd3b8c367c2 |
| genomic_resource.yaml | 2.83 KB | aa933779dd3c029fb693dce8eefab55f |
| genomic_resource_original.yaml | 2.74 KB | 2f3fdfd02845986f1c26c5eab6146e72 |
| statistics/ |