type: position_score
table:
  filename: ENCFF693FRV.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR196HGZ
  column_index: 3
  type: float
  desc: 'TF_ChIP-seq ENCSR196HGZ [biosample_summary="Homo sapiens liver tissue female child (4 years)" and target="JUND"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'TF_ChIP-seq ENCSR196HGZ [biosample_summary="Homo sapiens liver tissue female child (4 years)" and target="JUND"]'
  description: '**status**: released


    **biological\_replicates**: Rep 1, Rep 2


    **summary**: female child (4 years)


    **output\_type**: optimal IDR thresholded peaks


    **audit\_internal\_action**: Archived analysis {ENCAN755YYQ|/analyses/ENCAN755YYQ/}
    has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/}


    **audit\_warning**: Replicate concordance in ChIP-seq experiments is measured
    by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR
    thresholded peaks files {ENCFF014COI|/files/ENCFF014COI/}, {ENCFF441ULY|/files/ENCFF441ULY/}
    processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.36 and a
    self consistency ratio of 2.09. According to ENCODE standards, having both rescue
    ratio and self consistency ratio values < 2 is recommended, but having only one
    of the ratio values < 2 is acceptable.


    **audit\_warning**: Replicate concordance in ChIP-seq experiments is measured
    by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR
    thresholded peaks files {ENCFF235XPK|/files/ENCFF235XPK/}, {ENCFF693FRV|/files/ENCFF693FRV/}
    processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.36 and a
    self consistency ratio of 2.09. According to ENCODE standards, having both rescue
    ratio and self consistency ratio values < 2 is recommended, but having only one
    of the ratio values < 2 is acceptable.'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR196HGZ
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: female child (4 years)
    biosample_summary: Homo sapiens liver tissue female child (4 years)
    replication_type: isogenic
    biosample_ontology: /biosample-types/tissue_UBERON_0002107/
    perturbed: false
    doi: 10.17989/ENCSR196HGZ
    date_created: '2015-09-29T16:19:00.862705+00:00'
    date_released: '2016-06-30'
    submitter_comment: 'This experiment is being used in the ENCODE-DREAM Transcription
      Factor Binding Site Prediction Challenge (https://www.synapse.org/#!Synapse:syn6131484/wiki/400026).
      The files will be unavailable until after the challenge completes on 09-30-16.
      UPDATE: There will be a second round to the challenge that is expected to end
      on 01-11-2017'
    target: JUND
