TF_ChIP-seq_ENCSR196FSX
TF_ChIP-seq ENCSR196FSX [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP82" and target="ZFP82"]
×
| Id: | TF_ChIP-seq/ENCSR196FSX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR196FSX [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP82" and target="ZFP82"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZFP82 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN929RYG|/analyses/ENCAN929RYG/} has in progress subobject document {d21695d5-62c8-4b4c-879e-5111227615bc|/documents/d21695d5-62c8-4b4c-879e-5111227615bc/} audit_internal_action: Released analysis {ENCAN929RYG|/analyses/ENCAN929RYG/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF255YWC|/files/ENCFF255YWC/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF255YWC|/files/ENCFF255YWC/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.71. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF408CTC|/files/ENCFF408CTC/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline have a rescue ratio of 1.28 and a self consistency ratio of 3.34. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF665HBX|/files/ENCFF665HBX/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline have a rescue ratio of 1.28 and a self consistency ratio of 3.34. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR196FSX | float |
TF_ChIP-seq_ENCSR196FSX |
TF_ChIP-seq ENCSR196FSX [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZFP82" and target="ZFP82"]
|
|
[11.6, 445] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF408CTC.bed.gz | 222.15 KB | c7b4d4363777cf8cbc8c17fec5ed39d9 |
| ENCFF408CTC.bed.gz.dvc | 100.0 B | 3c9c206698dea235e1a8f2e8479d42bc |
| ENCFF408CTC.tabix.bed.gz | 180.0 KB | b43b60a21349ac25513d75a2395878ab |
| ENCFF408CTC.tabix.bed.gz.dvc | 106.0 B | 6d5d091c461d79e81aa22cdef0d1f659 |
| ENCFF408CTC.tabix.bed.gz.tbi | 70.47 KB | 39f39ce14b80925f3062eb006a768b63 |
| ENCFF408CTC.tabix.bed.gz.tbi.dvc | 109.0 B | 72345aab7556ec3a7485138a6e05897e |
| genomic_resource.yaml | 4.22 KB | 93b65b3274dc4e69174f5fa5c1f3e3ef |
| genomic_resource_original.yaml | 4.06 KB | 45c2a22f71562546c4c7603bfbb0894d |
| statistics/ |