TF_ChIP-seq_ENCSR193SZD
TF_ChIP-seq ENCSR193SZD [biosample_summary="Homo sapiens MCF 10A" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR193SZD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR193SZD [biosamplesummary="Homo sapiens MCF 10A" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN915MJF|/analyses/ENCAN915MJF/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF453XYF|/files/ENCFF453XYF/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF453XYF|/files/ENCFF453XYF/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.44. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR193SZD | float |
TF_ChIP-seq_ENCSR193SZD |
TF_ChIP-seq ENCSR193SZD [biosample_summary="Homo sapiens MCF 10A" and target="CTCF"]
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[3.25, 312] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF132JHE.bed.gz | 642.66 KB | 89e471f404314557bc765e7bd6510a14 |
| ENCFF132JHE.bed.gz.dvc | 100.0 B | 2211791358668ddb844322fa55a24789 |
| ENCFF132JHE.tabix.bed.gz | 503.35 KB | 8e352ff88bdc8f2ad9c0d5d5cbb6907c |
| ENCFF132JHE.tabix.bed.gz.dvc | 106.0 B | 1ca3b82cfcd2cfd80548e413b25230f5 |
| ENCFF132JHE.tabix.bed.gz.tbi | 261.5 KB | b4b8ea5f8b3aee91e788741f432fd903 |
| ENCFF132JHE.tabix.bed.gz.tbi.dvc | 110.0 B | 8d271d281fe0fd187a24534d8fdd9091 |
| genomic_resource.yaml | 2.66 KB | ffb16d96388e4ff92e064063f2a53fe2 |
| genomic_resource_original.yaml | 2.56 KB | 6d19374d2c830256c6489deab6664169 |
| statistics/ |