TF_ChIP-seq_ENCSR193ADW
TF_ChIP-seq ENCSR193ADW [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SETDB1" and target="SETDB1"]
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| Id: | TF_ChIP-seq/ENCSR193ADW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR193ADW [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SETDB1" and target="SETDB1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens SETDB1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN393ZSI|/analyses/ENCAN393ZSI/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN393ZSI|/analyses/ENCAN393ZSI/} has in progress subobject document {23ef4aef-5c53-40e8-9aad-a87e4c76ce2a|/documents/23ef4aef-5c53-40e8-9aad-a87e4c76ce2a/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF059TOU|/files/ENCFF059TOU/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF059TOU|/files/ENCFF059TOU/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.80. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF429CRE|/files/ENCFF429CRE/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF429CRE|/files/ENCFF429CRE/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.27. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF615OJH|/files/ENCFF615OJH/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline have a rescue ratio of 1.28 and a self consistency ratio of 3.39. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF878HLP|/files/ENCFF878HLP/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline have a rescue ratio of 1.28 and a self consistency ratio of 3.39. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR193ADW | float |
TF_ChIP-seq_ENCSR193ADW |
TF_ChIP-seq ENCSR193ADW [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SETDB1" and target="SETDB1"]
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[10.7, 281] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF615OJH.bed.gz | 47.99 KB | ff3364e9ffff6c53128c80e971f9828e |
| ENCFF615OJH.bed.gz.dvc | 99.0 B | 02c2be1d0cd5c6f385d157d1d445ed00 |
| ENCFF615OJH.tabix.bed.gz | 33.18 KB | 002f4e4d40bdf3a761baf6cddd7eb9e3 |
| ENCFF615OJH.tabix.bed.gz.dvc | 105.0 B | 052cc024d27b3a4b8a20f8f0e629ec73 |
| ENCFF615OJH.tabix.bed.gz.tbi | 25.94 KB | eef6ab20a084527b839d305c0823504a |
| ENCFF615OJH.tabix.bed.gz.tbi.dvc | 109.0 B | 69047bf3196c0cfa0c1618d87bf3be5c |
| genomic_resource.yaml | 5.49 KB | b27cc3b886a6d2ffaa19e75326cf3b45 |
| genomic_resource_original.yaml | 5.33 KB | e92205886c70033c0a55038766723d35 |
| statistics/ |