TF_ChIP-seq_ENCSR190GIW
TF_ChIP-seq ENCSR190GIW [biosample_summary="Homo sapiens A549 genetically modified (insertion) using CRISPR targeting H. sapiens NR5A2" and target="NR5A2"]
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| Id: | TF_ChIP-seq/ENCSR190GIW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR190GIW [biosamplesummary="Homo sapiens A549 genetically modified (insertion) using CRISPR targeting H. sapiens NR5A2" and target="NR5A2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens NR5A2 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN171LQT|/analyses/ENCAN171LQT/} has in progress subobject document {f26d8c52-f063-4a80-908d-2023b847c4ed|/documents/f26d8c52-f063-4a80-908d-2023b847c4ed/} audit_internal_action: Released analysis {ENCAN171LQT|/analyses/ENCAN171LQT/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF552GHN|/files/ENCFF552GHN/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF552GHN|/files/ENCFF552GHN/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.32. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF174NSP|/files/ENCFF174NSP/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF174NSP|/files/ENCFF174NSP/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.07. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR190GIW | float |
TF_ChIP-seq_ENCSR190GIW |
TF_ChIP-seq ENCSR190GIW [biosample_summary="Homo sapiens A549 genetically modified (insertion) using CRISPR targeting H. sapiens NR5A2" and target="NR5A2"]
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[14.2, 3.2e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF507JZI.bed.gz | 385.46 KB | ffde8f61524bf56833079aea48d1d9e8 |
| ENCFF507JZI.bed.gz.dvc | 100.0 B | 500167c074bbeb175760150b6ee93493 |
| ENCFF507JZI.tabix.bed.gz | 284.71 KB | 878d3a8a5795a1d5682c2c65cd98840b |
| ENCFF507JZI.tabix.bed.gz.dvc | 106.0 B | 10fd8a594f2268f2c61b5aa8a5d0115f |
| ENCFF507JZI.tabix.bed.gz.tbi | 113.52 KB | 50e98da1233c2f5a2a3920facc4714b5 |
| ENCFF507JZI.tabix.bed.gz.tbi.dvc | 110.0 B | ea70e57977bfa834469e6b80d2bfdbb3 |
| genomic_resource.yaml | 4.44 KB | a0fffb9e8eef342f86f90245cf04b53c |
| genomic_resource_original.yaml | 4.28 KB | 634e6268c85ce34a7149c5570caed9cb |
| statistics/ |