TF_ChIP-seq_ENCSR189PYJ
TF_ChIP-seq ENCSR189PYJ [biosample_summary="Homo sapiens K562" and target="SMAD2"]
×
| Id: | TF_ChIP-seq/ENCSR189PYJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR189PYJ [biosamplesummary="Homo sapiens K562" and target="SMAD2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN509OXP|/analyses/ENCAN509OXP/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN509OXP|/analyses/ENCAN509OXP/} has in progress subobject document {f32bdbfd-8e2e-4d3b-8097-efbb315e7998|/documents/f32bdbfd-8e2e-4d3b-8097-efbb315e7998/} audit_warning: Processed alignments file {ENCFF128YYU|/files/ENCFF128YYU/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 17011598 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting SMAD2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF269LIH|/files/ENCFF269LIH/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF269LIH|/files/ENCFF269LIH/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.68. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR189PYJ | float |
TF_ChIP-seq_ENCSR189PYJ |
TF_ChIP-seq ENCSR189PYJ [biosample_summary="Homo sapiens K562" and target="SMAD2"]
|
|
[6.95, 39.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF730QQD.bed.gz | 2.65 KB | eef4156582797bd79fcd9332c98a4353 |
| ENCFF730QQD.bed.gz.dvc | 98.0 B | 5233e734664f856ed51966b5baca1818 |
| ENCFF730QQD.tabix.bed.gz | 1.62 KB | 2431765beed35d1f5d4c972a3a9ce4c8 |
| ENCFF730QQD.tabix.bed.gz.dvc | 104.0 B | d99257eff356b502f20e6c263d8ce16d |
| ENCFF730QQD.tabix.bed.gz.tbi | 3.86 KB | 3d8cb6af5ac9a93a1ddc6a498ca916ee |
| ENCFF730QQD.tabix.bed.gz.tbi.dvc | 108.0 B | 740d903df39631947647ea5be936c615 |
| genomic_resource.yaml | 3.37 KB | 12d279f0cf440f56532bfd663ca0b7a5 |
| genomic_resource_original.yaml | 3.28 KB | a316577efc536029f5601d8b3f9df465 |
| statistics/ |