TF_ChIP-seq_ENCSR186JMM
TF_ChIP-seq ENCSR186JMM [biosample_summary="Homo sapiens HEK293 genetically modified (insertion) using CRISPR targeting H. sapiens MEIS1" and target="MEIS1"]
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| Id: | TF_ChIP-seq/ENCSR186JMM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR186JMM [biosamplesummary="Homo sapiens HEK293 genetically modified (insertion) using CRISPR targeting H. sapiens MEIS1" and target="MEIS1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens MEIS1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN663SNL|/analyses/ENCAN663SNL/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF552UYJ|/files/ENCFF552UYJ/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF552UYJ|/files/ENCFF552UYJ/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.32. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF830VIY|/files/ENCFF830VIY/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF830VIY|/files/ENCFF830VIY/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.39. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF628KKY|/files/ENCFF628KKY/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline have a rescue ratio of 1.21 and a self consistency ratio of 3.52. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR186JMM | float |
TF_ChIP-seq_ENCSR186JMM |
TF_ChIP-seq ENCSR186JMM [biosample_summary="Homo sapiens HEK293 genetically modified (insertion) using CRISPR targeting H. sapiens MEIS1" and target="MEIS1"]
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[6.52, 212] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF628KKY.bed.gz | 46.26 KB | beb3bce7bb30cf6925cf6f73dc0dd750 |
| ENCFF628KKY.bed.gz.dvc | 99.0 B | 8a07bb60f920265055d291830ad098fc |
| ENCFF628KKY.tabix.bed.gz | 31.54 KB | 5fa710a45621db993dabdc675449a32a |
| ENCFF628KKY.tabix.bed.gz.dvc | 105.0 B | 60d88147090b11836625e0120c7a9c91 |
| ENCFF628KKY.tabix.bed.gz.tbi | 27.6 KB | 538ba8ad5cf040fdf3e80d7df7c319a7 |
| ENCFF628KKY.tabix.bed.gz.tbi.dvc | 109.0 B | 43f4f65505922e8e4c034f79034c13e7 |
| genomic_resource.yaml | 4.75 KB | 52d4aa7717d6a24159f5217fce48f252 |
| genomic_resource_original.yaml | 4.59 KB | 630d50588a966a1c50a491923c1fdb43 |
| statistics/ |