TF_ChIP-seq_ENCSR185AYQ
TF_ChIP-seq ENCSR185AYQ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DR1" and target="DR1"]
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| Id: | TF_ChIP-seq/ENCSR185AYQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR185AYQ [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DR1" and target="DR1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens DR1 output_type: IDR thresholded peaks audit_internal_action: File {ENCFF485CTI|/files/ENCFF485CTI/} with status 'released' is derived from file {ENCFF399LFU|/files/ENCFF399LFU/} with status 'in progress'. audit_internal_action: Released analysis {ENCAN474RWC|/analyses/ENCAN474RWC/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF974UHV|/files/ENCFF974UHV/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF974UHV|/files/ENCFF974UHV/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.78. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF578BAL|/files/ENCFF578BAL/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF578BAL|/files/ENCFF578BAL/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.26. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR185AYQ | float |
TF_ChIP-seq_ENCSR185AYQ |
TF_ChIP-seq ENCSR185AYQ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens DR1" and target="DR1"]
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[10.4, 502] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF485CTI.bed.gz | 219.38 KB | 4e12de1903e189848fd51a1b585b5149 |
| ENCFF485CTI.bed.gz.dvc | 100.0 B | 190b1071d6e075f34e6eee100de183e2 |
| ENCFF485CTI.tabix.bed.gz | 175.31 KB | 14bb8863a29cb205f8a1d31f417f5aed |
| ENCFF485CTI.tabix.bed.gz.dvc | 106.0 B | 850312f7ef407e9a30316c1f87ea60ac |
| ENCFF485CTI.tabix.bed.gz.tbi | 81.18 KB | 55c3a3713d6a74f415f51a42a3a877ef |
| ENCFF485CTI.tabix.bed.gz.tbi.dvc | 109.0 B | 6c6c8cb0da06d558a130d4888759512b |
| genomic_resource.yaml | 4.4 KB | 21438895dc6ee566a549f107d8d171cf |
| genomic_resource_original.yaml | 4.24 KB | b31809c871a51623ab4524e93d0a8654 |
| statistics/ |