TF_ChIP-seq_ENCSR181ELQ
TF_ChIP-seq ENCSR181ELQ [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens OVOL2" and target="OVOL2"]
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| Id: | TF_ChIP-seq/ENCSR181ELQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR181ELQ [biosamplesummary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens OVOL2" and target="OVOL2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens OVOL2 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN450SRB|/analyses/ENCAN450SRB/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF291XLA|/files/ENCFF291XLA/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF291XLA|/files/ENCFF291XLA/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.89. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF270HXQ|/files/ENCFF270HXQ/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF270HXQ|/files/ENCFF270HXQ/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.40. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF581WFU|/files/ENCFF581WFU/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline have a rescue ratio of 1.88 and a self consistency ratio of 11.55. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR181ELQ | float |
TF_ChIP-seq_ENCSR181ELQ |
TF_ChIP-seq ENCSR181ELQ [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens OVOL2" and target="OVOL2"]
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[18.3, 291] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF581WFU.bed.gz | 6.12 KB | 38d4cefd3ebd32a2939ab9ca572873e6 |
| ENCFF581WFU.bed.gz.dvc | 98.0 B | 8399fb245a2d05b9b74cb24b8d759c95 |
| ENCFF581WFU.tabix.bed.gz | 4.03 KB | f560282458e77f9e44221d9c3a17a012 |
| ENCFF581WFU.tabix.bed.gz.dvc | 104.0 B | dc305f50fe17f43d4adcff528142c62f |
| ENCFF581WFU.tabix.bed.gz.tbi | 7.27 KB | d5ee97fa8a32ff79833f96ba88879d68 |
| ENCFF581WFU.tabix.bed.gz.tbi.dvc | 108.0 B | fc5723e0c56bab6057eab876e06c9911 |
| genomic_resource.yaml | 4.75 KB | 427f555c8a05e0172fd38f7761ab071c |
| genomic_resource_original.yaml | 4.59 KB | 12e2f85638ab2de0d256fd08a7e74044 |
| statistics/ |