TF_ChIP-seq_ENCSR178DEG
TF_ChIP-seq ENCSR178DEG [biosample_summary="Homo sapiens K562 stably expressing NR2C1" and target="NR2C1"]
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| Id: | TF_ChIP-seq/ENCSR178DEG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR178DEG [biosamplesummary="Homo sapiens K562 stably expressing NR2C1" and target="NR2C1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: stably expressing C-terminal eGFP-tagged NR2C1 output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN914XJJ|/analyses/ENCAN914XJJ/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF431GJK|/files/ENCFF431GJK/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF285CII|/files/ENCFF285CII/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF285CII|/files/ENCFF285CII/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 5.72. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF096KBP|/files/ENCFF096KBP/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF096KBP|/files/ENCFF096KBP/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 6.27. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR178DEG | float |
TF_ChIP-seq_ENCSR178DEG |
TF_ChIP-seq ENCSR178DEG [biosample_summary="Homo sapiens K562 stably expressing NR2C1" and target="NR2C1"]
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[12.5, 1.46e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF431GJK.bed.gz | 435.81 KB | 07faf723ed3075a3081c4c8d9b173ccf |
| ENCFF431GJK.bed.gz.dvc | 100.0 B | eb130177c9eedcc9cd455bed4dd6ff7a |
| ENCFF431GJK.tabix.bed.gz | 312.6 KB | d9c041e0950d8de255a7f29b02b98641 |
| ENCFF431GJK.tabix.bed.gz.dvc | 106.0 B | 3d3375d2fd0383550a2e491e3d21e658 |
| ENCFF431GJK.tabix.bed.gz.tbi | 146.48 KB | b35ca7526ae322dd3f836f336d11fcbc |
| ENCFF431GJK.tabix.bed.gz.tbi.dvc | 110.0 B | 8d20d547e02e3705f7bc170db5c01a25 |
| genomic_resource.yaml | 4.49 KB | 220762aacf52654c8ba2e7685cfea5d0 |
| genomic_resource_original.yaml | 4.38 KB | e77a90304fbb4d75b858be1a6f6a5421 |
| statistics/ |