type: position_score
table:
  filename: ENCFF883FJF.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR174GOO
  column_index: 3
  type: float
  desc: signal
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'ChIP-seq ENCSR174GOO [TISSUE: Homo sapiens HepG2 genetically modified
    (insertion) using CRISPR targeting H. sapiens HMGXB4, TARGET: HMGXB4]'
  description: '**status**: released


    **biological\_replicates**: Rep 1, Rep 2


    **summary**: genetically modified (insertion) using CRISPR targeting H. sapiens
    HMGXB4


    **output\_type**: optimal IDR thresholded peaks


    **audit\_internal\_action**: File {ENCFF883FJF|/files/ENCFF883FJF/} with status
    ''released'' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status
    ''archived''.


    **audit\_internal\_action**: Archived analysis {ENCAN053LNH|/analyses/ENCAN053LNH/}
    has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/}


    **audit\_warning**: Replicate concordance in ChIP-seq experiments is measured
    by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR
    thresholded peaks files {ENCFF883FJF|/files/ENCFF883FJF/}, {ENCFF429KHK|/files/ENCFF429KHK/}
    processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.48 and
    a self consistency ratio of 2.65. According to ENCODE standards, having both rescue
    ratio and self consistency ratio values < 2 is recommended, but having only one
    of the ratio values < 2 is acceptable.


    **audit\_warning**: Replicate concordance in ChIP-seq experiments is measured
    by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR
    thresholded peaks files {ENCFF128UTW|/files/ENCFF128UTW/}, {ENCFF250RLQ|/files/ENCFF250RLQ/}
    processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.48 and
    a self consistency ratio of 2.65. According to ENCODE standards, having both rescue
    ratio and self consistency ratio values < 2 is recommended, but having only one
    of the ratio values < 2 is acceptable.'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR174GOO
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: genetically modified (insertion) using CRISPR targeting
      H. sapiens HMGXB4
    biosample_summary: Homo sapiens HepG2 genetically modified (insertion) using CRISPR
      targeting H. sapiens HMGXB4
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0001187/
    perturbed: false
    doi: 10.17989/ENCSR174GOO
    date_created: '2016-07-28T18:55:27.021970+00:00'
    date_released: '2018-10-30'
    submitter_comment: ''
    target: HMGXB4
