TF_ChIP-seq_ENCSR173NAL
TF_ChIP-seq ENCSR173NAL [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF598" and target="ZNF598"]
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| Id: | TF_ChIP-seq/ENCSR173NAL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR173NAL [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF598" and target="ZNF598"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF598 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN646VGF|/analyses/ENCAN646VGF/} has in progress subobject document {19c8c479-7843-4448-92ff-dde1024775f8|/documents/19c8c479-7843-4448-92ff-dde1024775f8/} audit_internal_action: Released analysis {ENCAN646VGF|/analyses/ENCAN646VGF/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF560GWE|/files/ENCFF560GWE/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF560GWE|/files/ENCFF560GWE/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.15. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF303GVY|/files/ENCFF303GVY/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF303GVY|/files/ENCFF303GVY/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.76. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF364DXQ|/files/ENCFF364DXQ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline have a rescue ratio of 1.96 and a self consistency ratio of 4.13. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF356UIO|/files/ENCFF356UIO/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline have a rescue ratio of 1.96 and a self consistency ratio of 4.13. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR173NAL | float |
TF_ChIP-seq_ENCSR173NAL |
TF_ChIP-seq ENCSR173NAL [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF598" and target="ZNF598"]
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[13.1, 436] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF364DXQ.bed.gz | 296.86 KB | 53f2bc153ed13574e88722ecd2fae232 |
| ENCFF364DXQ.bed.gz.dvc | 100.0 B | 519c17eb81ee3649598047458214422c |
| ENCFF364DXQ.tabix.bed.gz | 239.47 KB | d527d4dee7840ec7770ddfc545782354 |
| ENCFF364DXQ.tabix.bed.gz.dvc | 106.0 B | 05bb8baa8d5c7b7efbcf989e2120a01f |
| ENCFF364DXQ.tabix.bed.gz.tbi | 95.58 KB | c7c2c72c31e053fa2ec388c6a22889c3 |
| ENCFF364DXQ.tabix.bed.gz.tbi.dvc | 109.0 B | 67a65e4b880aa9602b0813748ff0d04e |
| genomic_resource.yaml | 5.49 KB | b3ca19b1ed47d6358173a94d7157870f |
| genomic_resource_original.yaml | 5.33 KB | 051a69234a8a189ea1a0764dc965cf6e |
| statistics/ |