TF_ChIP-seq_ENCSR173CTF
TF_ChIP-seq ENCSR173CTF [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF580" and target="ZNF580"]
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| Id: | TF_ChIP-seq/ENCSR173CTF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR173CTF [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF580" and target="ZNF580"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF580 output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN240YFR|/analyses/ENCAN240YFR/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF293UEL|/files/ENCFF293UEL/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_warning: Processed alignments file {ENCFF753MGD|/files/ENCFF753MGD/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 18830409 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZNF580-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF020HIP|/files/ENCFF020HIP/}, {ENCFF782UVH|/files/ENCFF782UVH/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.32 and a self consistency ratio of 4.25. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF293UEL|/files/ENCFF293UEL/}, {ENCFF842LKY|/files/ENCFF842LKY/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.32 and a self consistency ratio of 4.25. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR173CTF | float |
TF_ChIP-seq_ENCSR173CTF |
TF_ChIP-seq ENCSR173CTF [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF580" and target="ZNF580"]
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[9.46, 476] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF293UEL.bed.gz | 401.32 KB | 4d1140623b196fdbcba6ab07590937e3 |
| ENCFF293UEL.bed.gz.dvc | 100.0 B | aa7070b9c4612a8005ba586cedc7ec47 |
| ENCFF293UEL.tabix.bed.gz | 314.92 KB | 282a5356ea3fa9c14fb1b6bd3d1cd5c2 |
| ENCFF293UEL.tabix.bed.gz.dvc | 106.0 B | 558cc51960ed268941160dbf67df2b18 |
| ENCFF293UEL.tabix.bed.gz.tbi | 127.34 KB | 7eed06c737f6c39490f54968f8a71c2a |
| ENCFF293UEL.tabix.bed.gz.tbi.dvc | 110.0 B | 5e3b6a7dbd527febde342d412d28f02a |
| genomic_resource.yaml | 3.47 KB | e66029622034a834f884c728c90d902b |
| genomic_resource_original.yaml | 3.31 KB | 2765e700bb15481bbe3cc924a9fe433a |
| statistics/ |