TF_ChIP-seq_ENCSR173AIR
TF_ChIP-seq ENCSR173AIR [biosample_summary="Homo sapiens stomach tissue female adult (51 years)" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR173AIR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR173AIR [biosamplesummary="Homo sapiens stomach tissue female adult (51 years)" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (51 years) output_type: pseudoreplicated IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN241DAH|/analyses/ENCAN241DAH/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF825XAC|/files/ENCFF825XAC/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF552ZFG|/files/ENCFF552ZFG/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF552ZFG|/files/ENCFF552ZFG/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 4.97. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR173AIR | float |
TF_ChIP-seq_ENCSR173AIR |
TF_ChIP-seq ENCSR173AIR [biosample_summary="Homo sapiens stomach tissue female adult (51 years)" and target="CTCF"]
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[14, 3e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF825XAC.bed.gz | 550.57 KB | ca8ed9477ebf5573ac20c1823e2010a3 |
| ENCFF825XAC.bed.gz.dvc | 100.0 B | 4fe8a6816c6d4fb0425bb72115d82e6b |
| ENCFF825XAC.tabix.bed.gz | 399.06 KB | 9203ce2c08baa9756bdd0a3954935fc6 |
| ENCFF825XAC.tabix.bed.gz.dvc | 106.0 B | 610cf353dba1452bfe6e01e60a970e26 |
| ENCFF825XAC.tabix.bed.gz.tbi | 217.35 KB | bdafd524da18400652488b35b2dadb4d |
| ENCFF825XAC.tabix.bed.gz.tbi.dvc | 110.0 B | 0db120dd39bae73e2e78b639fc54f0fb |
| genomic_resource.yaml | 2.92 KB | 27174b3ebb615035f8bd411b10880e66 |
| genomic_resource_original.yaml | 2.79 KB | 650a756ea312def915f708b0b72126c3 |
| statistics/ |