TF_ChIP-seq_ENCSR171TDM
TF_ChIP-seq ENCSR171TDM [biosample_summary="Homo sapiens A549 genetically modified (insertion) using CRISPR targeting H. sapiens EHF" and target="EHF"]
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| Id: | TF_ChIP-seq/ENCSR171TDM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR171TDM [biosamplesummary="Homo sapiens A549 genetically modified (insertion) using CRISPR targeting H. sapiens EHF" and target="EHF"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens EHF output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN519TWM|/analyses/ENCAN519TWM/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN519TWM|/analyses/ENCAN519TWM/} has in progress subobject document {60a3a389-37a0-4fcf-ada0-b02c79a4730b|/documents/60a3a389-37a0-4fcf-ada0-b02c79a4730b/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF439YWT|/files/ENCFF439YWT/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF439YWT|/files/ENCFF439YWT/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.66. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF222NXU|/files/ENCFF222NXU/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF222NXU|/files/ENCFF222NXU/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 4.87. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR171TDM | float |
TF_ChIP-seq_ENCSR171TDM |
TF_ChIP-seq ENCSR171TDM [biosample_summary="Homo sapiens A549 genetically modified (insertion) using CRISPR targeting H. sapiens EHF" and target="EHF"]
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[13.6, 962] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF507RLU.bed.gz | 116.03 KB | e55467a907d59b6a960e7219c5f6c518 |
| ENCFF507RLU.bed.gz.dvc | 100.0 B | 413165b077afaec1dafdc9ecc29d8f5e |
| ENCFF507RLU.tabix.bed.gz | 79.28 KB | 58179eb1966caac537435cd7c68e6a5b |
| ENCFF507RLU.tabix.bed.gz.dvc | 105.0 B | abecde36ab5c415d0387c1f8802c03dc |
| ENCFF507RLU.tabix.bed.gz.tbi | 40.22 KB | 8456cc4b0bee26d676fb642410a64e22 |
| ENCFF507RLU.tabix.bed.gz.tbi.dvc | 109.0 B | 22023410302d72cfdddd457af08e93cf |
| genomic_resource.yaml | 4.42 KB | f096e45e64a3725f14057da2c0e337e5 |
| genomic_resource_original.yaml | 4.27 KB | c341834d91cf0e0ee8bab12d824f14d8 |
| statistics/ |