TF_ChIP-seq_ENCSR171BKT
TF_ChIP-seq ENCSR171BKT [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF674" and target="ZNF674"]
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| Id: | TF_ChIP-seq/ENCSR171BKT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR171BKT [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF674" and target="ZNF674"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF674 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN773DEV|/analyses/ENCAN773DEV/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN773DEV|/analyses/ENCAN773DEV/} has in progress subobject document {9fb98408-a44c-43ae-b05b-2353b512d4da|/documents/9fb98408-a44c-43ae-b05b-2353b512d4da/} audit_warning: Processed alignments file {ENCFF549DQR|/files/ENCFF549DQR/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline has 16890218 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZNF674-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF628CTK|/files/ENCFF628CTK/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline has 15471399 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZNF674-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF549DQR|/files/ENCFF549DQR/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF549DQR|/files/ENCFF549DQR/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.15. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF628CTK|/files/ENCFF628CTK/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF628CTK|/files/ENCFF628CTK/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.71. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR171BKT | float |
TF_ChIP-seq_ENCSR171BKT |
TF_ChIP-seq ENCSR171BKT [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF674" and target="ZNF674"]
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[7.2, 359] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF450BWT.bed.gz | 97.13 KB | 3403f8fde28943d80e81192dac93a967 |
| ENCFF450BWT.bed.gz.dvc | 99.0 B | 82cb5e8128b4a8d98fe1bea41cf53215 |
| ENCFF450BWT.tabix.bed.gz | 73.98 KB | e6b3816b74890e0a46ef8cb105a35d89 |
| ENCFF450BWT.tabix.bed.gz.dvc | 105.0 B | 2c0b7204368f16c3fbe3caf0a0dbe0bd |
| ENCFF450BWT.tabix.bed.gz.tbi | 39.42 KB | d7573c7c860e9fd5e46f4045c2615d3b |
| ENCFF450BWT.tabix.bed.gz.tbi.dvc | 109.0 B | 0d5c630f900a2dd720566964d3b3c147 |
| genomic_resource.yaml | 5.42 KB | 021b0ab0c001c5b2c1ec09d9d9f02193 |
| genomic_resource_original.yaml | 5.26 KB | 4b04a269d9ccd3b3e9f02847b5d22827 |
| statistics/ |