TF_ChIP-seq_ENCSR170AMG
TF_ChIP-seq ENCSR170AMG [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXC1" and target="FOXC1"]
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| Id: | TF_ChIP-seq/ENCSR170AMG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR170AMG [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXC1" and target="FOXC1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens FOXC1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN104IPI|/analyses/ENCAN104IPI/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF640PBL|/files/ENCFF640PBL/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF640PBL|/files/ENCFF640PBL/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.47. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF942JZO|/files/ENCFF942JZO/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline have a rescue ratio of 1.05 and a self consistency ratio of 2.28. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR170AMG | float |
TF_ChIP-seq_ENCSR170AMG |
TF_ChIP-seq ENCSR170AMG [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens FOXC1" and target="FOXC1"]
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[13.7, 530] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF942JZO.bed.gz | 344.73 KB | 943f4e45e0a148b2643c98bd96d0efe3 |
| ENCFF942JZO.bed.gz.dvc | 100.0 B | 5f6bca5f28d61d65c4ff42533f45c2a0 |
| ENCFF942JZO.tabix.bed.gz | 276.9 KB | b898f34a6767a02af923ec5c8ee8fadc |
| ENCFF942JZO.tabix.bed.gz.dvc | 106.0 B | 6ae81405c4b08743ba9a73b8abea2e71 |
| ENCFF942JZO.tabix.bed.gz.tbi | 107.04 KB | 0f2c3b4405c9d2e6f8a7d4be78e6c44d |
| ENCFF942JZO.tabix.bed.gz.tbi.dvc | 110.0 B | 6079041f29ce6c1c31dd8e077cff4eef |
| genomic_resource.yaml | 3.49 KB | 9b1f932285f92307c5c02054762aa082 |
| genomic_resource_original.yaml | 3.32 KB | a8b6ce4d8a6550b8f80467545a4dd6da |
| statistics/ |