TF_ChIP-seq_ENCSR168DYA
TF_ChIP-seq ENCSR168DYA [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MAX" and target="MAX"]
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| Id: | TF_ChIP-seq/ENCSR168DYA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR168DYA [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MAX" and target="MAX"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens MAX output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN579HIJ|/analyses/ENCAN579HIJ/} has in progress subobject document {5676e1ac-498f-449d-96be-3b4f7214eaa5|/documents/5676e1ac-498f-449d-96be-3b4f7214eaa5/} audit_internal_action: Released analysis {ENCAN579HIJ|/analyses/ENCAN579HIJ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF581KKI|/files/ENCFF581KKI/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF581KKI|/files/ENCFF581KKI/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.87. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF956AAA|/files/ENCFF956AAA/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF956AAA|/files/ENCFF956AAA/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.16. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR168DYA | float |
TF_ChIP-seq_ENCSR168DYA |
TF_ChIP-seq ENCSR168DYA [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MAX" and target="MAX"]
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[8.38, 865] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF254ZDA.bed.gz | 1.21 MB | 09e7ce789ff6365dc1e87f2be7ecd3ce |
| ENCFF254ZDA.bed.gz.dvc | 101.0 B | 39ee6d3943861b181319028583cb1517 |
| ENCFF254ZDA.tabix.bed.gz | 892.26 KB | e02becec3140d82e3c68dd4d73d4dc48 |
| ENCFF254ZDA.tabix.bed.gz.dvc | 106.0 B | f565cfb286e4d0adf12383c6c1ae8228 |
| ENCFF254ZDA.tabix.bed.gz.tbi | 247.35 KB | eade77c78b8b76b0664c55ea51ac1136 |
| ENCFF254ZDA.tabix.bed.gz.tbi.dvc | 110.0 B | 62e212d34f912679178228bc08bfc344 |
| genomic_resource.yaml | 4.43 KB | 85be675591f3997cc6527b68038fc096 |
| genomic_resource_original.yaml | 4.27 KB | 303ed626fcbd8652c24fc967bd430733 |
| statistics/ |