TF_ChIP-seq_ENCSR168CEE
TF_ChIP-seq ENCSR168CEE [biosample_summary="Homo sapiens K562" and target="NCOA6"]
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| Id: | TF_ChIP-seq/ENCSR168CEE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR168CEE [biosamplesummary="Homo sapiens K562" and target="NCOA6"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF438BWN|/files/ENCFF438BWN/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN127WVL|/analyses/ENCAN127WVL/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF362KOB|/files/ENCFF362KOB/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF362KOB|/files/ENCFF362KOB/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 5.87. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF910GRL|/files/ENCFF910GRL/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF910GRL|/files/ENCFF910GRL/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 7.63. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR168CEE | float |
TF_ChIP-seq_ENCSR168CEE |
TF_ChIP-seq ENCSR168CEE [biosample_summary="Homo sapiens K562" and target="NCOA6"]
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[13.2, 4.46e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF438BWN.bed.gz | 87.42 KB | 668c677f841ce7b7b005cdf1afaa9ff7 |
| ENCFF438BWN.bed.gz.dvc | 99.0 B | 83852cea7995346ca6423776f6979898 |
| ENCFF438BWN.tabix.bed.gz | 61.34 KB | b88cd527730307c5a07eb63642875a16 |
| ENCFF438BWN.tabix.bed.gz.dvc | 105.0 B | 6aaa274a418d7498f656348dc16db30c |
| ENCFF438BWN.tabix.bed.gz.tbi | 42.74 KB | 30891509212484cce23a0593827ebecd |
| ENCFF438BWN.tabix.bed.gz.tbi.dvc | 109.0 B | 0e807d4b850da85df50668710acbc924 |
| genomic_resource.yaml | 4.13 KB | e06754b940b92c22e1d76c67017006a4 |
| genomic_resource_original.yaml | 4.03 KB | e6ed9eb84e2dae918e82ae5d6bd5bfcc |
| statistics/ |