TF_ChIP-seq_ENCSR168AUX
TF_ChIP-seq ENCSR168AUX [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens AHDC1" and target="AHDC1"]
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| Id: | TF_ChIP-seq/ENCSR168AUX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR168AUX [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens AHDC1" and target="AHDC1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens AHDC1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN227OQY|/analyses/ENCAN227OQY/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN227OQY|/analyses/ENCAN227OQY/} has in progress subobject document {181f5804-7dc4-424e-9961-cb3bb5e37d3e|/documents/181f5804-7dc4-424e-9961-cb3bb5e37d3e/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF155RNF|/files/ENCFF155RNF/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF155RNF|/files/ENCFF155RNF/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.94. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF048HNT|/files/ENCFF048HNT/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline have a rescue ratio of 1.82 and a self consistency ratio of 4.14. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF069FSH|/files/ENCFF069FSH/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline have a rescue ratio of 1.82 and a self consistency ratio of 4.14. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR168AUX | float |
TF_ChIP-seq_ENCSR168AUX |
TF_ChIP-seq ENCSR168AUX [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens AHDC1" and target="AHDC1"]
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[11.2, 403] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF048HNT.bed.gz | 476.74 KB | 5d8df8c74897e815eb63ca8bdcb1fa92 |
| ENCFF048HNT.bed.gz.dvc | 100.0 B | 7a59a8bbf839a80677320840da8a1220 |
| ENCFF048HNT.tabix.bed.gz | 365.59 KB | 331adc1d8c7aebaaf3bfaea30b7d415e |
| ENCFF048HNT.tabix.bed.gz.dvc | 106.0 B | e96fcf38b3e7aabc1da43e514b8db9be |
| ENCFF048HNT.tabix.bed.gz.tbi | 149.42 KB | 25d7b48ffcc9447fcd62d675bc910434 |
| ENCFF048HNT.tabix.bed.gz.tbi.dvc | 110.0 B | 18c1ca1ba47b3c4d8ed74dd1ebf6154b |
| genomic_resource.yaml | 4.22 KB | 5cb60bacf3fe10ad53c62e869ba7fddc |
| genomic_resource_original.yaml | 4.06 KB | e8d29bca5c507511a563ef4776a2bf1a |
| statistics/ |