TF_ChIP-seq_ENCSR166BAY
TF_ChIP-seq ENCSR166BAY [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB1" and target="ZBTB1"]
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| Id: | TF_ChIP-seq/ENCSR166BAY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR166BAY [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB1" and target="ZBTB1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN358TMR|/analyses/ENCAN358TMR/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF706BPG|/files/ENCFF706BPG/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline has 18962391 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZBTB1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF706BPG|/files/ENCFF706BPG/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF706BPG|/files/ENCFF706BPG/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.36. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF591GLK|/files/ENCFF591GLK/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF591GLK|/files/ENCFF591GLK/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.42. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF916CTU|/files/ENCFF916CTU/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline have a rescue ratio of 1.27 and a self consistency ratio of 2.42. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR166BAY | float |
TF_ChIP-seq_ENCSR166BAY |
TF_ChIP-seq ENCSR166BAY [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB1" and target="ZBTB1"]
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[10.5, 742] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF916CTU.bed.gz | 152.32 KB | 3054b0984e217753d68182d1cbf23d04 |
| ENCFF916CTU.bed.gz.dvc | 100.0 B | ea17b336b03d3207831c88f52e87bedd |
| ENCFF916CTU.tabix.bed.gz | 113.89 KB | 43d5f5151d04ddd37912454f27614afe |
| ENCFF916CTU.tabix.bed.gz.dvc | 106.0 B | cd1f6ea716a97fd80523de211872fb2e |
| ENCFF916CTU.tabix.bed.gz.tbi | 59.67 KB | 9aef8b70322bd218ab941cc90d53f22a |
| ENCFF916CTU.tabix.bed.gz.tbi.dvc | 109.0 B | 2b74eab28b367b78c739648f5ad12d9d |
| genomic_resource.yaml | 5.23 KB | 8dd0d5abd9a4399b076f2a69bb93a95d |
| genomic_resource_original.yaml | 5.07 KB | 3f901465326ecb669fee96144b32bbeb |
| statistics/ |