TF_ChIP-seq_ENCSR165YVX
TF_ChIP-seq ENCSR165YVX [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MXD1" and target="MXD1"]
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| Id: | TF_ChIP-seq/ENCSR165YVX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR165YVX [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MXD1" and target="MXD1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens MXD1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN736OVM|/analyses/ENCAN736OVM/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN736OVM|/analyses/ENCAN736OVM/} has in progress subobject document {68910fc5-615c-46de-a048-1fe55e99f7a9|/documents/68910fc5-615c-46de-a048-1fe55e99f7a9/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF242NAX|/files/ENCFF242NAX/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF242NAX|/files/ENCFF242NAX/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.11. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF523MXG|/files/ENCFF523MXG/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF523MXG|/files/ENCFF523MXG/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.60. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR165YVX | float |
TF_ChIP-seq_ENCSR165YVX |
TF_ChIP-seq ENCSR165YVX [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MXD1" and target="MXD1"]
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[10.5, 552] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF835WKW.bed.gz | 319.01 KB | 5e13af370c672cab11ba17246c9c54a4 |
| ENCFF835WKW.bed.gz.dvc | 100.0 B | 7cabce66c7fedc313f699f7bc622805c |
| ENCFF835WKW.tabix.bed.gz | 258.8 KB | cc9b603aa8e9864df7097c73c37f297c |
| ENCFF835WKW.tabix.bed.gz.dvc | 106.0 B | 5ff67e562d57550bc645c7f0e8dac921 |
| ENCFF835WKW.tabix.bed.gz.tbi | 99.81 KB | eaa8062340cdc5fd87429dcab60be30e |
| ENCFF835WKW.tabix.bed.gz.tbi.dvc | 110.0 B | 104a68234a78669820d1965a9a26c000 |
| genomic_resource.yaml | 4.43 KB | 023e3c8f9b406f1978a4e024662c0c6c |
| genomic_resource_original.yaml | 4.27 KB | 540fb71a8b7be35fcf2c4b172253f36e |
| statistics/ |