TF_ChIP-seq_ENCSR163VTS
TF_ChIP-seq ENCSR163VTS [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens NFYA" and target="NFYA"]
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| Id: | TF_ChIP-seq/ENCSR163VTS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR163VTS [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens NFYA" and target="NFYA"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens NFYA output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN410JLZ|/analyses/ENCAN410JLZ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF873PQC|/files/ENCFF873PQC/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF873PQC|/files/ENCFF873PQC/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.57. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF069BHV|/files/ENCFF069BHV/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF069BHV|/files/ENCFF069BHV/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.37. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR163VTS | float |
TF_ChIP-seq_ENCSR163VTS |
TF_ChIP-seq ENCSR163VTS [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens NFYA" and target="NFYA"]
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[10.4, 817] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF786CRW.bed.gz | 185.22 KB | 9fd1a4986fde22bc030c9024ce1a0858 |
| ENCFF786CRW.bed.gz.dvc | 100.0 B | b68efe50e91973382fa75eeef0876332 |
| ENCFF786CRW.tabix.bed.gz | 137.58 KB | f95690d121707dbccbc204e5384268d8 |
| ENCFF786CRW.tabix.bed.gz.dvc | 106.0 B | eda379908269ed862a27f877af3124dd |
| ENCFF786CRW.tabix.bed.gz.tbi | 78.2 KB | ffb096b0a65a7472d962c19faa0a0ce6 |
| ENCFF786CRW.tabix.bed.gz.tbi.dvc | 109.0 B | 5b955e431e0960408b2f81f78acbfebb |
| genomic_resource.yaml | 4.22 KB | 587085482476249b030bc9777b9944c0 |
| genomic_resource_original.yaml | 4.06 KB | 314ded8facee8a77e82d95f1aced2a6b |
| statistics/ |