TF_ChIP-seq_ENCSR163ULN
TF_ChIP-seq ENCSR163ULN [biosample_summary="Homo sapiens HFFc6" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR163ULN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR163ULN [biosamplesummary="Homo sapiens HFFc6" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN169WCL|/analyses/ENCAN169WCL/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF935UOA|/files/ENCFF935UOA/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF935UOA|/files/ENCFF935UOA/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.37. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR163ULN | float |
TF_ChIP-seq_ENCSR163ULN |
TF_ChIP-seq ENCSR163ULN [biosample_summary="Homo sapiens HFFc6" and target="CTCF"]
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[10.4, 1.11e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF294RSZ.bed.gz | 1.48 MB | 20002722bf1284a8e6449eefb3d1a240 |
| ENCFF294RSZ.bed.gz.dvc | 101.0 B | 69d497673f3f698a81bf9ee01af3c7f4 |
| ENCFF294RSZ.tabix.bed.gz | 906.49 KB | c51a7cc94257cf38246bac14a4ae04e6 |
| ENCFF294RSZ.tabix.bed.gz.dvc | 106.0 B | 8f9013f483c3f3d0c3a8182aeeb9552c |
| ENCFF294RSZ.tabix.bed.gz.tbi | 352.42 KB | c535df9fe65f6b1de0bfcf7acd9374d9 |
| ENCFF294RSZ.tabix.bed.gz.tbi.dvc | 110.0 B | aa049795d9a0e07350431a37ad0d8340 |
| genomic_resource.yaml | 2.65 KB | de26d0d599985e845369dfe067f7adad |
| genomic_resource_original.yaml | 2.56 KB | e3dd8183ceed07d3ed38dde0647b2f8c |
| statistics/ |