| Id: | TF_ChIP-seq/ENCSR163RYW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR163RYW [biosamplesummary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF189" and target="ZNF189"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF189 output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN599AWK|/analyses/ENCAN599AWK/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF014SGL|/files/ENCFF014SGL/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF014SGL|/files/ENCFF014SGL/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 6.09. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF332OVN|/files/ENCFF332OVN/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF332OVN|/files/ENCFF332OVN/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 5.54. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR163RYW | float |
TF_ChIP-seq_ENCSR163RYW |
TF_ChIP-seq ENCSR163RYW [biosample_summary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF189" and target="ZNF189"]
|
 |
[18.9, 5.14e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF699WXF.bed.gz | 705.53 KB | 2f6121f1ed8a7ad4d2b643597ec02f37 |
| ENCFF699WXF.bed.gz.dvc | 100.0 B | cff6e2f7c02765fda73bf5aa7bee8646 |
| ENCFF699WXF.tabix.bed.gz | 507.57 KB | 95f893ac9fdcebc21fbb99275beff999 |
| ENCFF699WXF.tabix.bed.gz.dvc | 106.0 B | de8230f118e4d13f9c1db4469e3fe7cc |
| ENCFF699WXF.tabix.bed.gz.tbi | 205.48 KB | 511e5899affc753bcd7e2c6e3ed1d7a7 |
| ENCFF699WXF.tabix.bed.gz.tbi.dvc | 110.0 B | 3a6561c923d58c86a5cb8dcef1f2674d |
| genomic_resource.yaml | 4.48 KB | ef559910c83664f1c6fca6a467943cd5 |
| genomic_resource_original.yaml | 4.3 KB | 5d25352b76ed0e4e53206e14fc91deeb |
| statistics/ |