TF_ChIP-seq_ENCSR162KZY
TF_ChIP-seq ENCSR162KZY [biosample_summary="Homo sapiens CD14-positive monocyte male adult (30 years)" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR162KZY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR162KZY [biosamplesummary="Homo sapiens CD14-positive monocyte male adult (30 years)" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (30 years) output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN221JPR|/analyses/ENCAN221JPR/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF907AXG|/files/ENCFF907AXG/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR162KZY | float |
TF_ChIP-seq_ENCSR162KZY |
TF_ChIP-seq ENCSR162KZY [biosample_summary="Homo sapiens CD14-positive monocyte male adult (30 years)" and target="CTCF"]
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[8.58, 402] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF476EKR.bed.gz | 953.37 KB | b51388f03bf7c038a83dbc69548290d8 |
| ENCFF476EKR.bed.gz.dvc | 100.0 B | 2ad5e023544ad73885c433dd2caeacdf |
| ENCFF476EKR.tabix.bed.gz | 694.61 KB | 22cd2ccc96c9f1ce0c3859c1fdf33b3a |
| ENCFF476EKR.tabix.bed.gz.dvc | 106.0 B | c5cc589f2ffe624ce70051510b984c10 |
| ENCFF476EKR.tabix.bed.gz.tbi | 235.14 KB | 7121d67871254bff4db07a3ad8810adc |
| ENCFF476EKR.tabix.bed.gz.tbi.dvc | 110.0 B | 1a2b1c7147703a818756d1168ef9c84d |
| genomic_resource.yaml | 2.12 KB | 310a43ab07076cbd9a65470568762de1 |
| genomic_resource_original.yaml | 2.0 KB | 6ab5ba38718200ebd8ee54a07aeb25df |
| statistics/ |