TF_ChIP-seq_ENCSR160ZLP
TF_ChIP-seq ENCSR160ZLP [biosample_summary="Homo sapiens H1" and target="KDM5A"]
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| Id: | TF_ChIP-seq/ENCSR160ZLP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR160ZLP [biosamplesummary="Homo sapiens H1" and target="KDM5A"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN211PSE|/analyses/ENCAN211PSE/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF405CIQ|/files/ENCFF405CIQ/} processed by ChIP-seq ENCODE4 v1.7.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF405CIQ|/files/ENCFF405CIQ/} processed by ChIP-seq ENCODE4 v1.7.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.76. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF159BRA|/files/ENCFF159BRA/} processed by ChIP-seq ENCODE4 v1.7.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF159BRA|/files/ENCFF159BRA/} processed by ChIP-seq ENCODE4 v1.7.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.19. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR160ZLP | float |
TF_ChIP-seq_ENCSR160ZLP |
TF_ChIP-seq ENCSR160ZLP [biosample_summary="Homo sapiens H1" and target="KDM5A"]
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[6.21, 550] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF471OCM.bed.gz | 67.47 KB | 4270db71b2d5760a6eba69103194b08f |
| ENCFF471OCM.bed.gz.dvc | 99.0 B | 6d50f996436b73a7d65b29946fe94a12 |
| ENCFF471OCM.tabix.bed.gz | 53.54 KB | cb2854834c61b82e83952ed600ee27a3 |
| ENCFF471OCM.tabix.bed.gz.dvc | 105.0 B | c10595cb40faed1f24f80000ffa9478e |
| ENCFF471OCM.tabix.bed.gz.tbi | 34.63 KB | 656033ee0d3e690160bf6f2dc7d56ea7 |
| ENCFF471OCM.tabix.bed.gz.tbi.dvc | 109.0 B | a8e8123d4f7f3f897a54091dacc0848e |
| genomic_resource.yaml | 4.1 KB | f336a277335950192f5d57912b4a2023 |
| genomic_resource_original.yaml | 4.0 KB | 5ba4b9a9290c763191a085e16bb5498a |
| statistics/ |